PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041145
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 237aa    MW: 26447.4 Da    PI: 6.2304
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041145genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l+ +++ +G  +W++ ++  g+ R++k+c++rw +yl
      Lus10041145 14 RGPWTPEEDNILISYIRNHGHTNWRALPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP

2Myb_DNA-binding48.12.7e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+  +++++++lG++ W++Ia++++ gRt++++k+ w+++l
      Lus10041145  67 RGNFTAHEEHSIIHLHQLLGNK-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-25564IPR009057Homeodomain-like
PROSITE profilePS5129423.612965IPR017930Myb domain
SuperFamilySSF466891.65E-2910108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002492.4E-161461IPR001005SANT/Myb domain
CDDcd001673.16E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129417.73266116IPR017930Myb domain
SMARTSM007174.5E-1166114IPR001005SANT/Myb domain
PfamPF002491.5E-1367112IPR001005SANT/Myb domain
CDDcd001675.70E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRAPCCAKM GLKRGPWTPE EDNILISYIR NHGHTNWRAL PKLAGLLRCG KSCRLRWINY  60
LNPDIKRGNF TAHEEHSIIH LHQLLGNKWS AIAAKLPGRT DNEIKNVWHT HLKKRLNLTN  120
NNPETETQSS LSTQPSFRSI NNGGAAVSSS LTENSLSSPE TTSCAQLPSS SFSPETEDFP  180
HFDESLWSES GEYWQFDTQF STESGLTELD GVGETNGVVD DSMVFWYDLL VQAGRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121175109B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091315.14e-83PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH43e-73MYB4_ORYSJ; Myb-related protein Myb4
TrEMBLA0A067KW193e-80A0A067KW19_JATCU; MYB family protein
STRINGSi018182m3e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-75myb domain protein 15